Coarse-grained variables for particle-based models: diffusion maps and animal swarming simulations | SpringerLink
A short introduction to Diffusion Maps
A short introduction to Diffusion Maps
Frontiers | Meeting the Challenges of High-Dimensional Single-Cell Data Analysis in Immunology
Understanding the geometry of transport: Diffusion maps for Lagrangian trajectory data unravel coherent sets: Chaos: An Interdisciplinary Journal of Nonlinear Science: Vol 27, No 3
GitHub - hsidky/dmaps: C++ Accelerated Python Diffusion Maps Library
pydiffmap
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut
An Introduction to Diffusion Maps
CellRank for directed single-cell fate mapping | Nature Methods
PHATE: A Dimensionality Reduction Method for Visualizing Trajectory Structures in High-Dimensional Biological Data | bioRxiv